TODO

manual
automatic
with/without QC

CV of reps
ICC
min diff
max diff

REPLICATE	NUMBER_FCS_FILES
_panel2	22
A_panel1	42
A_panel2	28
B_panel1	22
B_panel2	12
C_panel1	34
C_panel2	18
D_panel1	26
D_panel2	12
E_panel1	32
E_panel2	18
F_panel1	48
F_panel2	30
G_panel1	38
G_panel2	24
H_panel1	32
H_panel2	18

Prop of files with lymph counts > 50K = 0.9709101 Prop of files with lymph counts < 50K = 0.0290899

Total number of Control fcs files (currently) = 228

Total number of Control groups (currently) = 17

Percent of parent CV summary

GROUP	GROUP_MEDIAN_CV	GROUP_MAD_CV
_panel2	32.52019	38.260513
A_panel1	12.20578	11.082615
A_panel2	29.33195	33.163277
B_panel1	10.76501	7.605525
B_panel2	19.68432	16.786948
C_panel1	12.82536	10.039333
C_panel2	11.11351	5.616338
D_panel1	21.92303	13.082674
D_panel2	22.73467	20.182015
E_panel1	25.12323	17.641241
E_panel2	14.36604	15.351661
F_panel1	20.39913	21.866917
F_panel2	17.83741	20.281833
G_panel1	13.91622	13.134659
G_panel2	18.58631	18.207699
H_panel1	14.30045	15.323726
H_panel2	28.06433	29.012563

Percent of lymph CV summary

GROUP	GROUP_MEDIAN_CV	GROUP_MAD_CV
A_panel1	13.28149	11.934802
B_panel1	14.40307	9.199097
C_panel1	13.69781	8.105083
D_panel1	31.58159	4.941907
E_panel1	27.69392	22.391223
F_panel1	27.67787	25.043098
G_panel1	15.81788	12.262463
H_panel1	31.83468	14.155940

Replicate data clustering

## Aggregation function missing: defaulting to length